Algebraic and Combinatorial Computational Biology

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  • Publisher : Academic Press
  • Release : 08 October 2018
  • ISBN : 9780128140697
  • Page : 434 pages
  • Rating : 4.5/5 from 103 voters

Algebraic and Combinatorial Computational Biology Book PDF summary

Algebraic and Combinatorial Computational Biology introduces students and researchers to a panorama of powerful and current methods for mathematical problem-solving in modern computational biology. Presented in a modular format, each topic introduces the biological foundations of the field, covers specialized mathematical theory, and concludes by highlighting connections with ongoing research, particularly open questions. The work addresses problems from gene regulation, neuroscience, phylogenetics, molecular networks, assembly and folding of biomolecular structures, and the use of clustering methods in biology. A number of these chapters are surveys of new topics that have not been previously compiled into one unified source. These topics were selected because they highlight the use of technique from algebra and combinatorics that are becoming mainstream in the life sciences. Integrates a comprehensive selection of tools from computational biology into educational or research programs Emphasizes practical problem-solving through multiple exercises, projects and spinoff computational simulations Contains scalable material for use in undergraduate and graduate-level classes and research projects Introduces the reader to freely-available professional software Supported by illustrative datasets and adaptable computer code

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Algebraic and Combinatorial Computational Biology

Algebraic and Combinatorial Computational Biology
  • Author : Raina Robeva,Matthew Macauley
  • Publisher : Academic Press
  • Release Date : 2018-10-08
  • ISBN : 9780128140697
DOWNLOAD BOOKAlgebraic and Combinatorial Computational Biology

Algebraic and Combinatorial Computational Biology introduces students and researchers to a panorama of powerful and current methods for mathematical problem-solving in modern computational biology. Presented in a modular format, each topic introduces the biological foundations of the field, covers specialized mathematical theory, and concludes by highlighting connections with ongoing research, particularly open questions. The work addresses problems from gene regulation, neuroscience, phylogenetics, molecular networks, assembly and folding of biomolecular structures, and the use of clustering methods in biology. A number

Patterns in Permutations and Words

Patterns in Permutations and Words
  • Author : Sergey Kitaev
  • Publisher : Springer Science & Business Media
  • Release Date : 2011-08-30
  • ISBN : 9783642173332
DOWNLOAD BOOKPatterns in Permutations and Words

There has been considerable interest recently in the subject of patterns in permutations and words, a new branch of combinatorics with its roots in the works of Rotem, Rogers, and Knuth in the 1970s. Consideration of the patterns in question has been extremely interesting from the combinatorial point of view, and it has proved to be a useful language in a variety of seemingly unrelated problems, including the theory of Kazhdan—Lusztig polynomials, singularities of Schubert varieties, interval orders, Chebyshev

Combinatorial Computational Biology of RNA

Combinatorial Computational Biology of RNA
  • Author : Christian Reidys
  • Publisher : Springer Science & Business Media
  • Release Date : 2010-10-29
  • ISBN : 0387767312
DOWNLOAD BOOKCombinatorial Computational Biology of RNA

In this monograph, new combinatorial and computational approaches in the study of RNA structures are presented which enhance both mathematics and computational biology. It begins with an introductory chapter, which motivates and sets the background of this research. In the following chapter, all the concepts are systematically developed. The reader will find * integration of more than forty research papers covering topics like, RSK-algorithm, reflection principle, singularity analysis and random graph theory * systematic presentation of the theory of pseudo-knotted RNA structures

Algebraic Statistics for Computational Biology

Algebraic Statistics for Computational Biology
  • Author : L. Pachter,B. Sturmfels
  • Publisher : Cambridge University Press
  • Release Date : 2005-08-22
  • ISBN : 0521857007
DOWNLOAD BOOKAlgebraic Statistics for Computational Biology

This book, first published in 2005, offers an introduction to the application of algebraic statistics to computational biology.

Algebraic and Discrete Mathematical Methods for Modern Biology

Algebraic and Discrete Mathematical Methods for Modern Biology
  • Author : Raina Robeva
  • Publisher : Academic Press
  • Release Date : 2015-05-09
  • ISBN : 9780128012710
DOWNLOAD BOOKAlgebraic and Discrete Mathematical Methods for Modern Biology

Written by experts in both mathematics and biology, Algebraic and Discrete Mathematical Methods for Modern Biology offers a bridge between math and biology, providing a framework for simulating, analyzing, predicting, and modulating the behavior of complex biological systems. Each chapter begins with a question from modern biology, followed by the description of certain mathematical methods and theory appropriate in the search of answers. Every topic provides a fast-track pathway through the problem by presenting the biological foundation, covering the relevant

Models of the Mind

Models of the Mind
  • Author : Grace Lindsay
  • Publisher : Bloomsbury Publishing
  • Release Date : 2021-03-04
  • ISBN : 9781472966452
DOWNLOAD BOOKModels of the Mind

The human brain is made up of 85 billion neurons, which are connected by over 100 trillion synapses. For more than a century, a diverse array of researchers searched for a language that could be used to capture the essence of what these neurons do and how they communicate – and how those communications create thoughts, perceptions and actions. The language they were looking for was mathematics, and we would not be able to understand the brain as we do today without it.

Phenotypic Switching

Phenotypic Switching
  • Author : Herbert Levine,Mohit Kumar Jolly,Prakash Kulkarni,Vidyanand Nanjundiah
  • Publisher : Academic Press
  • Release Date : 2020-06-10
  • ISBN : 9780128179970
DOWNLOAD BOOKPhenotypic Switching

Phenotypic Switching: Implications in Biology and Medicine provides a comprehensive examination of phenotypic switching across biological systems, including underlying mechanisms, evolutionary significance, and its role in biomedical science. Contributions from international leaders discuss conceptual and theoretical aspects of phenotypic plasticity, its influence over biological development, differentiation, biodiversity, and potential applications in cancer therapy, regenerative medicine and stem cell therapy, among other treatments. Chapters discuss fundamental mechanisms of phenotypic switching, including transition states, cell fate decisions, epigenetic factors, stochasticity, protein-based inheritance,

A Project-Based Guide to Undergraduate Research in Mathematics

A Project-Based Guide to Undergraduate Research in Mathematics
  • Author : Pamela E. Harris,Erik Insko,Aaron Wootton
  • Publisher : Springer Nature
  • Release Date : 2020-04-17
  • ISBN : 9783030378530
DOWNLOAD BOOKA Project-Based Guide to Undergraduate Research in Mathematics

This volume provides accessible and self-contained research problems designed for undergraduate student projects, and simultaneously promotes the development of sustainable undergraduate research programs. The chapters in this work span a variety of topical areas of pure and applied mathematics and mathematics education. Each chapter gives a self-contained introduction on a research topic with an emphasis on the specific tools and knowledge needed to create and maintain fruitful research programs for undergraduates. Some of the topics discussed include:• Disease modeling• Tropical

Analytic Combinatorics

Analytic Combinatorics
  • Author : Philippe Flajolet,Robert Sedgewick
  • Publisher : Cambridge University Press
  • Release Date : 2009-01-15
  • ISBN : 9781139477161
DOWNLOAD BOOKAnalytic Combinatorics

Analytic combinatorics aims to enable precise quantitative predictions of the properties of large combinatorial structures. The theory has emerged over recent decades as essential both for the analysis of algorithms and for the study of scientific models in many disciplines, including probability theory, statistical physics, computational biology, and information theory. With a careful combination of symbolic enumeration methods and complex analysis, drawing heavily on generating functions, results of sweeping generality emerge that can be applied in particular to fundamental structures

Discrete and Topological Models in Molecular Biology

Discrete and Topological Models in Molecular Biology
  • Author : Nataša Jonoska,Masahico Saito
  • Publisher : Springer Science & Business Media
  • Release Date : 2013-12-23
  • ISBN : 9783642401930
DOWNLOAD BOOKDiscrete and Topological Models in Molecular Biology

Theoretical tools and insights from discrete mathematics, theoretical computer science, and topology now play essential roles in our understanding of vital biomolecular processes. The related methods are now employed in various fields of mathematical biology as instruments to "zoom in" on processes at a molecular level. This book contains expository chapters on how contemporary models from discrete mathematics – in domains such as algebra, combinatorics, and graph and knot theories – can provide perspective on biomolecular problems ranging from data analysis, molecular

Algebraic and Numeric Biology

Algebraic and Numeric Biology
  • Author : Katsuhisa Horimoto,Masahiko Nakatsui,Nikolaj Popov
  • Publisher : Springer
  • Release Date : 2012-01-13
  • ISBN : 9783642280672
DOWNLOAD BOOKAlgebraic and Numeric Biology

This book constitutes the refereed proceedings of the 4th International Conference on Algebraic Biology, ANB 2010, held at the Castle of Hagenberg, Austria in July/August 2010. The conference is a follow up of the AB Conference. The 10 papers were carefully reviewed and selected from numerous submissions. The papers are organized in topical sections on mathematical modeling, system analysis and design, genomics, molecular structure analysis, automata theory, artificial intelligence, sequence analysis, automated reasoning, formal language and hybrid symbolic numerical methods.

Using the Mathematics Literature

Using the Mathematics Literature
  • Author : Kristine K. Fowler
  • Publisher : CRC Press
  • Release Date : 2004-05-25
  • ISBN : 0824750357
DOWNLOAD BOOKUsing the Mathematics Literature

This reference serves as a reader-friendly guide to every basic tool and skill required in the mathematical library and helps mathematicians find resources in any format in the mathematics literature. It lists a wide range of standard texts, journals, review articles, newsgroups, and Internet and database tools for every major subfield in mathematics and details methods of access to primary literature sources of new research, applications, results, and techniques. Using the Mathematics Literature is the most comprehensive and up-to-date resource

Discrete Mathematics Days 2022

Discrete Mathematics Days 2022
  • Author : Luis Felipe Tabera Alonso
  • Publisher : Ed. Universidad de Cantabria
  • Release Date : 2022-07-03
  • ISBN : 9788419024022
DOWNLOAD BOOKDiscrete Mathematics Days 2022

El congreso Discrete Mathematics Days (DMD20/22) tendrá lugar del 4 al 6 de julio de 2022, en la Facultad de Ciencias de la Universidad de Cantabria (Santander, España). Este congreso internacional se centra en avances dentro del campo de la Matemática discreta, incluyendo, de manera no exhaustiva: · Algoritmos y Complejidad · Combinatoria · Teoría de Códigos · Criptografía · Geometría Discreta y Computacional · Optimización Discreta · Teoría de Grafos · Problemas de localización discreta y temas relacionados Las ediciones anteriores

Mathematical Concepts and Methods in Modern Biology

Mathematical Concepts and Methods in Modern Biology
  • Author : Raina Robeva,Terrell Hodge
  • Publisher : Academic Press
  • Release Date : 2013-02-26
  • ISBN : 9780124157934
DOWNLOAD BOOKMathematical Concepts and Methods in Modern Biology

Mathematical Concepts and Methods in Modern Biology offers a quantitative framework for analyzing, predicting, and modulating the behavior of complex biological systems. The book presents important mathematical concepts, methods and tools in the context of essential questions raised in modern biology. Designed around the principles of project-based learning and problem-solving, the book considers biological topics such as neuronal networks, plant population growth, metabolic pathways, and phylogenetic tree reconstruction. The mathematical modeling tools brought to bear on these topics include Boolean

Algebraic Statistics

Algebraic Statistics
  • Author : Seth Sullivant
  • Publisher : American Mathematical Soc.
  • Release Date : 2018-11-19
  • ISBN : 9781470435172
DOWNLOAD BOOKAlgebraic Statistics

Algebraic statistics uses tools from algebraic geometry, commutative algebra, combinatorics, and their computational sides to address problems in statistics and its applications. The starting point for this connection is the observation that many statistical models are semialgebraic sets. The algebra/statistics connection is now over twenty years old, and this book presents the first broad introductory treatment of the subject. Along with background material in probability, algebra, and statistics, this book covers a range of topics in algebraic statistics including